Petralia F, Ma W, Yaron TM, Caruso FP, Tignor N, Wang JM, Charytonowicz D, Johnson JL, Huntsman EM, Marino GB, Calinawan A, Evangelista JE, Selvan ME, Chowdhury S, Rykunov D, Krek A, Song X, Turhan B, Christianson KE, Lewis DA, Deng EZ, Clarke DJB, Whiteaker JR, Kennedy JJ, Zhao L, Segura RL, Batra H, Raso MG, Parra ER, Soundararajan R, Tang X, Li Y, Yi X, Satpathy S, Wang Y, Wiznerowicz M, González-Robles TJ, Iavarone A, Gosline SJC, Reva B, Robles AI, Nesvizhskii AI, Mani DR, Gillette MA, Klein RJ, Cieslik M, Zhang B, Paulovich AG, Sebra R, Gümüş ZH, Hostetter G, Fenyö D, Omenn GS, Cantley LC, Ma'ayan A, Lazar AJ, Ceccarelli M, Wang P. 2024. Pan-cancer proteogenomics characterization of tumor immunity Cell. 10.1016/j.cell.2024.01.027

Marino GB, Clarke DJB, Deng EZ, Ma'ayan A. 2023. RummaGEO: Automatic Mining of Human and Mouse Gene Sets from GEO .

Marino GB, Ngai M, Clarke DJB, Fleishman RH, Deng EZ, Xie Z, Ahmed N, Ma'ayan A. 2023. GeneRanger and TargetRanger: processed gene and protein expression levels across cells and tissues for target discovery. Nucleic acids research. 10.1093/nar/gkad399

Marino GB, Wojciechowicz ML, Clarke DJB, Kuleshov MV, Xie Z, Jeon M, Lachmann A, Ma'ayan A. 2023. lncHUB2: aggregated and inferred knowledge about human and mouse lncRNAs. Database : the journal of biological databases and curation. 10.1093/database/baad009

Marino GB, Ahmed N, Xie Z, Jagodnik KM, Han J, Clarke DJB, Lachmann A, Keller MP, Attie AD, Ma’ayan A et al.. 2023. D2H2: diabetes data and hypothesis hub Bioinformatics Advances. 10.1093/bioadv/vbad178

Clarke DJB, Marino GB, Deng EZ, Xie Z, Evangelista JE, Ma’ayan A. 2024. Rummagene: massive mining of gene sets from supporting materials of biomedical research publications Communications Biology. 10.1038/s42003-024-06177-7

Evangelista JE, Clarke DJB, Xie Z, Marino GB, Utti V, Jenkins S, Ahooyi TM, Bologa CG, Yang JJ, Binder JL et al.. 2023. Toxicology knowledge graph for structural birth defects. Communications medicine. 10.1038/s43856-023-00329-2

Evangelista JE, Xie Z, Marino GB, Nguyen N, Clarke DJB, Ma'ayan A. 2023. Enrichr-KG: bridging enrichment analysis across multiple libraries. Nucleic acids research. 10.1093/nar/gkad393

Deng EZ, Fleishman RH, Xie Z, Marino GB, Clarke DJB, Ma'ayan A. 2023. Computational screen to identify potential targets for immunotherapeutic identification and removal of senescence cells. Aging cell. 10.1111/acel.13809

Raufer S, C I, Zosuls A, Marino G, N Blanke, IJ Bigio, O'Malley JT, BJ Burgess, JB Nadol, Guinan J et al.. 2020. Anatomy of the Human Osseous Spiral Lamina and Cochlear Partition Bridge: Relevance for Cochlear Partition Motion. Journal of the Association for Research in Otolaryngology : JARO. 10.1007/s10162-020-00748-1